Supplementary Material of the Manuscript The shown animation is a space filling Voronoi Treemap based visualization of the protein inventory of S. aureus along a growth experiment with t0 (transfer from aerobically grown exponential phase culture to anaerobic conditions), t5 (5h anaerobic conditions), t7 (7h anaerobiosis) and t9 (9h anaerobiosis).
For zooming please use the mouse wheel. The movie shows a sequence of slides with expression data at t=0h, t=5h, t=7h and t=9h after a shift of an aerobically grown culture to anaerobic conditions. Expression on protein level has been encoded in shades of blue with white (no expression at all) and blue (highest observed expression along the shown time line). Cell sizes encode the maximum protein amount over the monitored sampling points t0 to t9.
For the display of the single samples please pause the animation (PAUSE button left hand side of the time scale) and move the slider correspondingly. To resume the movie use the PLAY button correspondingly.
Holding down the hierarchy buttons on the right bottom corner temporally displays the gene functional assignments of all shown proteins. [Here] the underlying data can be downloaded.

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hierarchy level	1 2 3 4

Daniela Zühlke^1*, Kirsten Dörries^2*, Jörg Bernhardt¹, Sandra Maaß¹, Jan Muntel^1#§, Volkmar Liebscher³, Katharina Riedel¹, Michael Lalk², Uwe Völker⁴, Susanne Engelmann^1$, Dörte Becher¹, Stephan Fuchs^1ф, Michael Hecker¹

¹Institute of Microbiology, Ernst-Moritz-Arndt-University Greifswald, F.-L.-Jahn-Strasse 15, D-17487 Greifswald, Germany
²Institute of Biochemistry, Ernst-Moritz-Arndt-University Greifswald, Felix-Hausdorff-Strasse 4, D-17487 Greifswald, Germany
³Department of Mathematics and Informatics, Ernst-Moritz-Arndt-University Greifswald, Walther-Rathenau-Strasse 47, D-17487 Greifswald, Germany
⁴Interfaculty Institute for Genetics and Functional Genomics, Ernst-Moritz-Arndt-University Greifswald, F.-L.-Jahn-Strasse 15 a, D-17487 Greifswald, Germany
^#Current address: Department of Pathology, Boston Children’s Hospital and Harvard Medical School, and the § Proteomics Center, Boston Children’s Hospital, Boston, MA, USA
^$Current address: Institute of Microbiology, Technical University Braunschweig, Inhoffenstrasse 7, D-38124 Braunschweig, Germany
^фCurrent address: Robert Koch Institute, FG13 Nosocomial Pathogens and Antibiotic Resistance, Wernigerode, Germany
^*contributed equally